More posts like this
-
Interpreting 3D refine results
written by Curious •Hello! I used 3D refine to refine the model of a protein I'm working on. It generated five refined models. How do I judge which …
-
(Scaffolding ) Gap Closer - Gap Filler , SSPACE
written by Bioinfo •Hello everyone . please i need your help in specefic step in NGS anaslysis i did assembly using spades and i obtained contigs results , …
-
failure to run merlin parametric linkage analysis
written by monaallouba •Hello, I have converted my plink files into merlin via mega2. I then tried to run the basis parametric linkage command merlin -d parametric.dat -p …
-
Question of cuffmerge
written by dhpark •Hello, I have a quick question. I am trying to merge my cufflinks. I have 2 different groups and 3 replicates each, totally 6 cufflinks. …
-
Simulation of Tajima's D using msms
written by aloke205 •I want to perform coalescent simulation of Tajima's D value under demographic null model and selection model of heterozygote advantage utilising msms. Can anyone please …
-
Using wig2array from iSeeRNA
written by anu014Hello Biostars, I want to identify lincRNAs from RNA-Seq data. For this purpose, first I ran cufflinks which gave me GTF to enter into iSeeRNA …
-
Good resolution Heatmap
written by BAGenoHi I am trying to create heatmaps. I have used heatmap.2, pheatmap and clustvis. I have dataset of 2000 rows containing allele frquency of different …
-
Count of Indels and Point mutations
written by VasuHello Everyone, Can anyone please tell me a way to count the Indels > 3 bp, Indels b/w 1 & 3 bp and also how …
-
How to Filter MACS1.4 output on the basis of Normalized Strand Cross-correlation coefficient (NSC) …
written by Sudhir JadhaoHello Everyone, I have Macs 1.4 result. I want to filtered out MACS result on the basis of NSC and RSC score. Can anyone please …
-
how to design biological pathways
written by kartikayprasad •Hello friends, i am new in this field, can anyone please help me in designing biological pathway. how to design biological pathways? what are the …