calculate dxy from vcf file

Would you recommend user friendly software to calculate dxy from VCF file?

genome vcf dxy genetic

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updated 4.4 years ago by dthorbur

• written 4.9 years ago by ams2sa •

1 answer

A little late, but I was also looking for a tool that can calculate Dxy. I found a few suggestions:

The R package PopGenome is likely the easiest. Follow Mark Ravinet's tutorial here.
Another newer tool appears to be pixy.

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written 4.4 years ago by dthorbur

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