Calculate nSL
how to apply a sliping windows procedure on the obtained genome-wide nSL distribution. I only konw how to calculate . I hope I can get your help. Thank you! this paper:enter link description here
selection
ihs
snp
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Visualizing the most likely ends of transcripts
written by GenesisBio •Hi all, I have a distribution of 3' and 5' ending sites of a transcript. I want to visualize it like the following photo: ![enter …
-
Pathway Analysis using GAGE
written by OST •Hello! How did this paper (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6372280/pdf/elife-41930.pdf) categorize the pathways in figure 2D (see below)? Are the categorizations of the pathways (Signaling, Immune Response, etc) determined …
-
How to compute t-statistic
written by zacky •According to the paper titled "[Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types][1]" published from Nature Genetics in 2018, the author …
-
What does it mean BLASTx in de novo RNAseq analysis?
written by Riku •Hi, all. I try to get an assembly stat. According to some articles, it tends to have information that can be obtained by BLAST. For …
-
How to calculate covariance between betas for GxE interaction using PLINK 2.0
written by ApprenticeHi. I would like to perform genome-wide meta-analysis of GxE interaction across 5 cohorts. I'm going to use a joint meta-analysis of Mannig et al. …
-
Find the genomic position of CTCF binding site on DMPK gene
written by kspataHi All, I am trying to find the Genomics position coordinates for CTCF binding sites on DMPK gene. I have obtained the entire human genomic …
-
Plot: Abundance at telomer region
written by popayekid55Hi all, are there any tool or R packages to generate this [image][1]. Depth at each position can be obtained from mpileup. How to add …
-
V-plot construction for MNAse-seq data
written by rozenbej •Hello, I am trying to construct V-plots from paired end MNAse -seq data. as described in this publication: [enter link description here][1] [1]: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215028/ http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215028/ …
-
Venn diagram for annotation results
written by setaHi all, I have done the blast of a transcriptome against multiple databases. Now, I want to draw a Venn diagram similar to Figure 1 …
-
Representing Genome Wide Regulatory Elements
written by ancient_learner<p>Hi I want to represent the presence of certain important regulatory elements for each chromosome separately. I came across a particular paper (figure 2) and …