This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Is raw data from NCBI GEO in the same order as processed data?

I'm trying to analyze the dataset GSE57475, but I need to reprocesses the data. However, the raw data sample columns are in the format (SAMPLE1, SAMPLE2, ..., SAMPLEN).

Is it safe to assume that this is in the same order as the processed dataset? There is nothing that I can find in the raw data, the phenotype data, or the different formats of the processed data that links SAMPLE* to their respective GSM accession numbers.

Thanks for any help

geo microarray r
• 1,007 views • link
updated by Hyper_Odin Hyper_Odin • written by mincej20 • mincej20

I would say its not safe to assume that. You should ask the authors by emailing them.

• 0 views • link
written by Hyper_Odin Hyper_Odin

0 answers

No answers yet.

Log in to answer this question.

More posts like this