Filter peaks based on coverage

Is there a public tool that allows one to filter a BAM / BED file based on coverage and/or remove overlapping peaks?

eclip chip-seq

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updated 5.0 years ago by Nitin Narwade

• written 5.0 years ago by kstangline •

Did you check bedtools, BEDOPS, GenomicRanges?

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written 5.0 years ago by Nitin Narwade

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