Finding Molecular function for more than 100 GO terms
I have a list of more than 200 unique gene terms. I want to get the Molecular Function of every distinct GO term. Is there any software that can be used to do this?
gene
ontology
• 1,286 views
•
link
updated
by
Jean-Karim Heriche
•
written
by
abhilashtripathi10 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Help with R code to get a unique list
written by Space_Life •Hi, I have gene ontology data that looks like this (sample data). I manually downloaded the gene ontology data from the Uniprot website. ![Data view][1] …
-
Mapping unique GO term description given a specific GO id
written by aranyak111 •I have a list of GO ids and I want to find unique term description such that if I provide say 200 GO IDs I …
-
Finding Molecular function for more than 100 GO terms
written by abhilashtripathi10 •I have a list of more than 200 unique gene terms. I want to get the Molecular Function of every distinct GO term. Is there …
-
How to retrieve all GO terms at level 2 from a list input
written by oseias.rf.junior •Hi everybody, I have a list of GO terms (not the GO ID, but the GO terms, like, "pathogenesis" or "intracellular organelle part") that I …
-
can you calculate GO enrichment from GO terms and IDs?
written by Emma •Hey all, I used the tool Pannzer to get GO information for my gene list in a non model species (monarch butterfly). I know Pannzer …
-
Venn Diagramm or Alternative: Compare Protein Lists and add Annotation: Cellular Component
written by Benni •I want to compare protein lists (Uniprot Acc) in a Venn Diagramm or an alternative (Venn only works for max. 3 Lists?). Then I want …
-
Reveal GO Biological Process using biomaRt
written by Anton ShekhovHello dear community, I was wondering is it possible to get an access to the GO: Biological process for every gene name in transcriptome? In …
-
Summarizing long list of GO terms
written by kevluv93I performed gene enrichment on a list of differentially expressed genes using Plant MetGenMap and have a long list of enriched GO terms. However, some …
-
How to get the most important Gene ontology term for a gene
written by vicky •Hi All I have a question that if a gene has 20 GO term names associated with that, then how I can pick the most …
-
Get All Gene Ontology (Molecular Function) Parents For A Go Term Using Perl
written by sayonidas03<p>Hi, </p> <p>I would be very grateful to you if anyone can point me towards the answer as to how to get all parent GO …
Please list few gene terms you have.
Could you please clarify?
Do you have 200 GO terms and would like to find those that come from the GO molecular function domain?
Or are you asking about finding the GO terms from the molecular function domain that are associated with each of 200 genes?