atorreso Thank you so much!
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Tastulek •
Remove A List of Sequences from the MSA File
Hello Everyone,
I have an MSA file containing hundreds of sequences aligned by BWA. Now I would like to remove a list of sequences from the MSA file, is there a quick way to do this? or Could the MSA file be split into two?!
I would appreciate your response!
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You can prepare a list with the sequences you want to keep (so the reverse of the sequences you want to remove) and use seqtk. As explained in their github (https://github.com/lh3/seqtk):
seqtk subseq in.fq name.lst > out.fq
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