compilation terminated when R package installation in linux without superuser permission
Hello,
I met a problem when I installed R package "spp" in linux without superuser permission. The error was "bed2vector.cpp:15:10 fatal error: bzliv.h: No such file or directory
#include <bzlib.h>
^~~~~~~~~~~~
compilation terminated.
make : *** [/public/home/yyusy/software/anaconda3/envs/lib/R/etc/Makeconf:176: bed2vector.o] Error 1
ERROR : compilation failed for package 'spp' "
How can I install the libarary of "libbz2” manually without the permission of sudo ?
• 2,059 views
•
link
written
by
whaiyu06 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Leafcutter installation issue
written by jyotik •
-
Problem in installing 'magick' R package
written by applepie •
-
DESeq2 installation failures
written by dantuluri •
-
How to install `BETA` on linux server?
written by Dan •
-
Unable to install "DESeq2"(annobin.so : No such file or directory)
written by nakane_clan •
-
Trouble installing Bioconductor packages inside a conda environment.
written by TonyCN •
-
Install STAR-Fusion inside Conda (Snakemake) fails
written by Nathalie •
-
How to install PEER in R?
written by sahar.salimi92 •
-
fwrite.c:10:49: fatal error: zlib.h: No such file or directory #include <zlib.h> // for compressi…
written by hsu •
-
Unable to install mclust package in rstudio
written by apulunuj •
which command line did you use?
Since you are already using conda as it seems you can either install the package (spp) itself via conda, or install the dependencies with it, e.g. https://anaconda.org/anaconda/bzip2 and then try to compile the R package again.
The old fashioned way would be to compile bzip2 from source https://www.sourceware.org/bzip2/downloads.html
Thanks a lot. There was another wrong messeage of a new dependent library when I installed libbz2 and I installed the new library file according to the err hint but another new issue occured. There are so many interdependent header files , it seems too verbose to settle these errors.