Hi,

I am trying out the cnvkit genemetrics function. When I check the help file with

cnvkit.py genemetrics -h

, there is a whole range of statistical output options available such as --ttest.

How do we get the output for this T-test? I tried :

cnvkit.py genemetrics input.cnr -o output.txt --ttest

The output I got is the same as without --ttest.