SOAPaligner- 2bwt-builder segmentation fault
I am trying to run the 2bwt-builder command from soapaligner but I keep getting a segmentation fault error. I tried with different fasta file of different size. I also tried with the conda, sudo and github install and they all give me the same error. here is my code:
2bwt-builder fasta.fasta
segmentation fault
I have a computer with 32 gb of ram, so memory shouldn't be an issue.
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How much data are you aligning?
SOAP is also kinda old now, you might want to try a newer aligner (depending on the source of your data).
I would like to align k-mers to a reference genome. What do you suggest that I use instead of soap? thank you
What is the origin of the read? Bacterial? Eukaryotic?