Discussion on binning multiple metagenomes at the same time?
I recently found out about VAMB and they have a very interesting feature where you can bin multiple samples at the same time and then split them out later.
I'm wondering what your thoughts are on doing this with MaxBin2 and Metabat2? MaxBin2 has the -markerset argument and I'm wondering how a high strain heterogeneity (i.e. multiple strains binned together) will influence the outcome of the bins. At the same time, how will this affect the Metabat2 algorithm?
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