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KING relatedness inference working way too long...
Entering edit mode
12 days ago

Dear all,

I run KING tool to infer relatedness analysis between 15K samples. However it works for several days in a row and still not a single bit of the result was produced. however in the manual it says that the analysis should take seconds.

I was able to run king before, I don't understand what is wrong. No error message is produced (this is the worst). Plink recognized 600K variants in my VCF and correct number of samples, no complaints from this side.

What can be wrong? How can I check if KING actually does something and simply needs more time?

large-cohort • 19 views

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