automatic detection of false-positive large indels checking their GQ scores
Hi, all.
I have a multisample vcf. Mi goal is to automate the detection of large indels that are possibly FP after the calling variant step. How could I parse the lenght of REF or ALT fileds to detect indels with more than 100 bases in lenght?
I share here an example
Any suggestion will be appreciated.
• 1,119 views
•
link
written
by
bio.pelayo •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
do you have the tags END or SVLEN in the INFO field ?
Hi, Pierre. No, I do not. INFO field is empty!