Get Rs Number Based On Chromosome and Position in GWAS summary statistics
I have a GWAS summary statistic with chr number and position. is there any way to add the rs id for all the SNPs using ANNOVAR or another tool? I was thinking to use ANNOVAR and I could not a helpful document or tutorial for that.
thank you, appreciate the help !!!
• 3,066 views
•
link
updated
by
Kevin Blighe
•
written
by
sihambarkus •
•
written
by
sihambarkus •
1 answer
Hey,
I'm sorry - just linking you to previous answers:
- Getting rsid from chr:pos
- Obtaining The Snp Rs Number With The Chromosomal Position
- Get rs number based on position
- Get Rs Number Based On Chromosome and Position
For ANNOVAR, I would recommend going through the Quick Start: https://annovar.openbioinformatics.org/en/latest/user-guide/startup/
Kevin
• 0 views
•
link
written
by
Kevin Blighe
Log in to answer this question.
More posts like this
-
PRS calculation from two sample genotype results
written by Arun •
-
Imputing allele frequency into GWAS summary statistics
written by newbie problems •
-
rs#### or SNP-###
written by Giulia.cosenza •
-
Lift over of GWAS summary stat file from Hg38 to Hg19
written by AVA •
-
Can Meta-GWAS summary statistic results be used for Meta-GWAS (For example, METAL)?
written by li •
-
Post GWAS mapping SNPs to genes and calculating p-values
written by ssj.1503 •
-
tool for genome sequence manipulation
written by dentepre •
-
extract SNPs (rs.....) along with subject ID and pedigree ID in PLINK
written by pkpdkachroo •
-
How to craete snps map file?
written by forever
-
avdbsnp144 not compatible with chromosome coordinates
written by agata88
