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tool for genome sequence manipulation
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17 months ago
dentepre • 0

Hi, I;m looking for genome-browse like tool. I need to have a possiblity to load genome from fasta file, select region by adding primer sequences and add genes and rs... snps/another mutations. Mostly for clinical genomic purpose. I know IGV, but there is no way to add for example primers as separate track.

thanks d.

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why would there not be any option to load primers?

IGV simply reads and displays every gff (or other format) data in a track.

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16 months ago
Brice Sarver ♦ 2.6k
United States

Have you considered Geneious?

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When you suggest a commercial/paid program it is useful to indicate that clearly. Majority of people are looking for free options and it can save them a few clicks.

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When I was in grad school, Geneious had a free version that could handle fasta sequences and primers. Looks like this isn't the case anymore.

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23 months ago
oigl • 60

To work with an annotated genome you can use UGENE Sequence View.

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