This is a test version of Biostars. For the public version, visit https://www.biostars.org.
tool for genome sequence manipulation

Hi, I;m looking for genome-browse like tool. I need to have a possiblity to load genome from fasta file, select region by adding primer sequences and add genes and rs... snps/another mutations. Mostly for clinical genomic purpose. I know IGV, but there is no way to add for example primers as separate track.

thanks d.

genome sequencing
• 2,048 views • link
updated by oigl oigl • written by dentepre • dentepre

why would there not be any option to load primers?

IGV simply reads and displays every gff (or other format) data in a track.

• 1 views • link
written by lieven.sterck lieven.sterck

2 answers

Have you considered Geneious?

• 1 views • link
written by Brice Sarver Brice Sarver

When you suggest a commercial/paid program it is useful to indicate that clearly. Majority of people are looking for free options and it can save them a few clicks.

• 1 views • link
written by GenoMax GenoMax

When I was in grad school, Geneious had a free version that could handle fasta sequences and primers. Looks like this isn't the case anymore.

• 1 views • link
written by Brice Sarver Brice Sarver

To work with an annotated genome you can use UGENE Sequence View.

• 1 views • link
written by oigl oigl

Log in to answer this question.

More posts like this