Question

Sugarcane Rerence sequence Assembly

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2.9 years ago

malikbilal1059 • 0

I want to align the sugarcane RNA-seq reads against reference genome of sugarcane but the complete genome assembly is not available to date. Please guide which reference sequence/assembly can be used for this purpose. Thanks!

NGS reference Sugarcane transcriptome data genome • 473 views

ADD COMMENT • link updated 2.9 years ago by GenoMax 141k • written 2.9 years ago by malikbilal1059 • 0

score 1 · Answer 1 · 2021-05-27

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2.9 years ago

GenoMax 141k

Looks like you best bet may be to get the data from Sugarcane Genome Hub.

Ensembl has Saccharum spontaneum which is likely not what you want. NCBI also seems to have the same species.

ADD COMMENT • link 2.9 years ago by GenoMax 141k