ChIP-seq correlation with CNS
Hello,
I wonder if it is possible to display ChIP - seq data as CNV graph. Maybe there is a tool or a method/software to convert ChIP data into segmented data.
Thank you so much in advance.
• 1,750 views
•
link
written
by
buffealo •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
CNV Analysis for single bulk RNA-Seq Sample
written by hkarakurt
-
How to logarithmically combine chip seq peaks
written by tsomakiank •
-
Publicly Available ChIP-seq Samples Does not Overlap
written by buffealo •
-
ChIP-seq heatmap input bed file
written by buffealo •
-
Direct - indirect binding of a transcription factor in chip-seq analysis
written by buffealo •
-
HOMER peak-motif relationship as direct-indirect binding
written by buffealo •
-
Integration of Chip-seq and RNA-Seq data
written by anu014
-
Software to visualize ChIP-seq peak file
written by afli
-
Motif prediction in Chip-seq data
written by anu014
-
ChIP-nexus peak call
written by Sudhir Jadhao
Are you looking to call copy number variants from ChIP-Seq data or trying to correlate ChIP-Seq to CNVs? Your title says one thing and your post the other.
Yes and I wrote it wrong in the title. Sorry for the inconvenience. I am trying to use my ChIP-seq data to determine the CNV in the intergenic regions.
Probably better not to do so, you will not get sufficient genomic coverage from ChIP-seq data.
Is it possible to correlate ChIP-seq data with CNV? I do not know how but I mean maybe normalizing ChIP to copy number somehow