found unannotated gene via rna-seq, can i use public datasets (raw data) to find clinical info about this gene?
if i found an unannotated gene in a cell line via rna-seq, can i use GEO or TCGA (download raw data) and find if this gene is up/downregulated in patient samples?
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Taktak31 •
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How would you match an "unannotated" gene to other datasets? Or do you mean entries such as
LINC*/LOC*that are unspecified loci/long non coding RNAs (I'm going off of the tag you've used)i am trying to use the chromosome location to ID it in raw data sets. is this possible?
What do you mean by "ID it" and "raw datasets"?