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GFF/GTF file download from UCSC or gnomAD

Hello, I need to download GFF/GTF file from somewhere, preferably UCSC or gnomAD; I have never done that - can somebody instruct, how to download them correctly?

Thank you!

gff
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updated by Juke34 Juke34 • written by storm1907 • storm1907

1 answer

For human: Go there http://hgdownload.soe.ucsc.edu/goldenPath/archive/hg38/ncbiRefSeq/ and click on it.

Otherwise copy the link and run a wget in a terminal like this

wget http://hgdownload.soe.ucsc.edu/goldenPath/archive/hg38/ncbiRefSeq/hg38.2021-02-10.ncbiRefSeq.gtf.gz

I would suggest to download the file directly from Refseq raher than UCSC that will at some point mirror few files from there:

https://ftp.ncbi.nlm.nih.gov/genomes/refseq/vertebrate_mammalian/Homo_sapiens/

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written by Juke34 Juke34

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