Trouble with plotMA
I have been using RStudio to retrieve results through the plotMA function. But unfortunately the results that are being produced seems to look wayward. In fact, I get a blank graph when I try to plot the logFoldChange after performing lfcShrink and passing it to a variable called res.
res <- lfcShrink(dds_subset, coef="Intercept", type="apeglm")
resSig <- subset(res, padj < 0.1)
resSig
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I guess same as here Strange MA plot from DESeq2
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Try to use DESeq2::plotMA as several packages have a plotMA function.