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Create Mutational signature plot from vcf file.

Hello,

I have a vcf file with thousands of mutations (mouse) and I would like to represent these mutations in a plot very similar to this:

mutational_sig

I tried to search for packages that provide such a function, but so far I did not find any. I only found packages which try to infer the mutational signatures in my data, but I really just want the visual representation, as in the plot above.

If anyone could point me to a package that has such a function, I would be very happy.

Cheers!

r python mutational
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written by nhaus • nhaus

3 answers

The mutSignatures R package has that visual.

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written by jared.andrews07 jared.andrews07

tried this ?

comutplotter

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written by amitpande74 • amitpande74

Unfortunately, it does not seem like this tool outputs this particular plot.

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written by nhaus • nhaus

If someone comes across this later: I ended up using MutationalPatterns which provides the function plot_96_profile, which does what I want.

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written by nhaus • nhaus

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