Thanks so much for recommending this.
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das2000sidd •
integrate two single cell datasets and use transfer learning approach using annotated cell atlas
Hi everyone,
I am very frustrated with this and hence decided to reach out here.
Does anyone have experience with scRNA seq where you use a pre annotated single cell atlas and integrate your data to look for similarities from cell type of pre annotated single cell atlas and the given data?
There is a tool called scArches to do this but was wondering if somebody had worked on a similar problem and could just tools or pipelines to follow?
Thanks so much!
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Ram
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das2000sidd •
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das2000sidd •
1 answer
You will likely be very interested in SingleR.
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jared.andrews07
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