Variant analysis for target NGS sequencing data?

Hi everyone,

We have illumina fastq files having target sequences (specific gene). We want to go for variant/SNP calling.

Helping with suggesting any types of pipeline/s tools will be highly appreciated.

Thank you

ngs variants

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updated 3.2 years ago by Ram

• written 5.3 years ago by MSRS

What have you tried?

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written 5.3 years ago by Ram

I have tried Snippy. But It can process single sample at a time.

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written 5.3 years ago by MSRS

What about samtools/bcftools/GATK?

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written 5.3 years ago by Ram

0 answers

No answers yet.

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