Extract MAF for vcf file
Hi All,
I have a vcf file and would like to extract MAF from dbSNP corresponding to each SNP from the vcf file. Doing it one by one would take ages. Any suggestions?
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Pierre Lindenbaum
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written
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Sumeet •
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written
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Sumeet •
1 answer
convert the dbsnp to CHROM POS REF ALT MAF using bcftools query and then use bcftools annotate to transfert the dbsnp table to your vcf.
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Pierre Lindenbaum
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