I am now using an alternative called FASTQC.
I've successfully installed MiniConda and ran its .exe. It established C:/Users/User/miniconda3.
I'm following along with SimLord tutorial, that requires MiniConda.
cding to C:/Users/User/miniconda3 - I run the first command in Bash:
>>>conda create -n simlord python=3 pip numpy scipy cython
bash: conda: command not found
How can I rectify this? Sorry if it's something obvious.
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Anonymous •
>>> in your conda line seems to indicate that you have logged into python interpreter. Exit back out to the shell prompt using quit().
I believe that conda offers to modify your $PATH at the end of the installation so the executable is available. Otherwise find where it is located and add that directory to your $PATH.
It appears that you are doing this on Windows due to the C:/ path specification. Certain programs may not be supported on windows though simlord seems to indicate that it may work as long as python3 and other dependencies are available.
$ quit()
> conda create -n simlord python=3 pip numpy scipy cython
bash: syntax error near unexpected token `conda'
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Anonymous •
Hi, I am new and unsure of any of this. I have however been successful at installing an alternative called FASTQC, and can open my .fastq file here. Thank you for your responses.
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