Trying to install RSeQC-python package
I am trying to install RSeQC
but keep getting error listed below although I have Python-lzo installed. Please help
Failed building wheel for python-lzo
Running setup.py clean for python-lzo
Failed to build python-lzo
Installing collected packages: pysam, six, numpy, python-lzo, bx-python, cython, RSeQC
Running setup.py install for python-lzo ... error
Complete output from command /usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_5SgaO/python-lzo/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-iT8urN-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:
running install
running build
running build_ext
building 'lzo' extension
creating build
creating build/temp.linux-x86_64-2.7
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-nbjU53/python2.7-2.7.15~rc1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/lzo -I/usr/include/python2.7 -c lzomodule.c -o build/temp.linux-x86_64-2.7/lzomodule.o
lzomodule.c:35:10: fatal error: lzo/lzo1x.h: No such file or directory
#include <lzo/lzo1x.h>
^~~~~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
Command "/usr/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-_5SgaO/python-lzo/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-iT8urN-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-_5SgaO/python-lzo/
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You haven't mentioned what Linux distribution this is. If you are on a Debian/Ubuntu system, you need to install the system library that python-lzo requires i.e., liblzo2-dev. On RPM based systems like Fedora or openSUSE, this package is most likely named lzo2-devel.
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Hello KG,
how have you tried to installed in? From source or via
pip?And please use the formatting bar (especially the

codeoption) to present your post better. I've done it for you this time.Thank you!
fin swimmer
Thanks a lot. I tried both ways via pip as well as from source. same error both ways.
Thanks again
Hi, Have you seen this https://stackoverflow.com/questions/40424097/file-not-found-error-when-pip-installing-python-lzo