Analysis of the gene set enrichment in clusters

Hi. I have to find enrichment using Kegg pathways and gene ontology in all clusters. Can you tell me what steps I need to take and what libraries can I use?

biopython fishertest genesetenrichment

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written 5.4 years ago by stgr1202 •

Please do not delete questions after receiving an answer.

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written 5.4 years ago by ATpoint

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There are many good and easy to use enrichment tools. Most of them in R, some as webservers. g:profiler has a python package and lets you set background, which is quite important.

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written 5.4 years ago by jared.andrews07

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