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How to know the number of SNP after running the population module using stacks

Hi, I am new to stacks for analyzing RAD-Seq data, I have run all the modules. I will like to know to get the total SNP from my sample after running the population module. Is there a command line to use and inside which file?

Thanks

population snp
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updated by strive • strive • written by virtualinterlect • virtualinterlect

1 answer

The file populations.log contains information about how many SNPS were retained in the end

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written by strive • strive

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