Gene Expression

Question

[12art]

Hello.

I have done an analysis with protein genomes. I have some lists with human proteins of interest. I want to find their gene expression and I would like to use some Python API. Any ideas?

[jared.andrews07]

This is a bit of a loaded question. Their expression in what exactly? There are many different types of tissues and cells and expression can vary wildly between them. EBI's Expression Atlas has an associated R package that is fairly easy to use. I don't know of any python APIs that return expression info.

[12art]

Thank you. I want to retrieve for each of these genes their differential expression across different tissues !

[Kevin Blighe]

Please clearly explain:

1. the data that you currently have, and its source
2. the processing steps that you have performed on the data, including showing your code
3. what you want to do with the data