Getting distance matrix from specific models for AA/Nt MSA
Hi,
How would I go about getting a distance matrix with specific models (GTR, WAG, HKY) for my msa? I need it for a python project. I found code for the older models like Kimura, Tamura, logdet but the newer models are somehow much harder to find.
I know that RAXML use these models for their tree phylogeny but i dont know how to extract their distance matrix?
Does anyone have any insight? Thanks in advance
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Klios3th •
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