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Cuffmerge: Command Not Found

Hello, I am doing RNA seq anaylsis. TO prepare to do actual anaylsis i am doing the paper example http://bio.lundberg.gu.se/courses/vt13/nprot.2012.016.pdf So to solve any issues that may come up. An issue came up, cuffmerge. I installed the latest version cufflinks on my linux and doubled checked all correct. I ran the command on the command line 

 cuffmerge -g genes.gtf -s genome.fa assemblies.txt

And got the error 

cuffmerge: command not found

I ran it in the same directory been using to get this far but now ...

Please can anyone suggest what might be wrong

cuffmerge cufflinks rna-seq
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updated by Istvan Albert Istvan Albert • written by martinkara7 • martinkara7

1 answer

as the error says, cuffmerge was not found.

Please read more on how to run programs from the command line.

http://www.linuxquestions.org/questions/linux-newbie-8/how-to-run-program-from-command-line-313900/

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written by Istvan Albert Istvan Albert

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