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Looking For Microarray Datasets Of Both Mirna And Mrna Measurements For Any Type Of Cancer

Can anybody give the the microarray dataset having expression of miRNA and mRNA both in any cancers.You can give me the accession NO. of GEO,arrayexpress etc.

microarray

You can find these by searching the databases, surely.

2 answers

I think using the TCGA data is the best option as you get many samples with miRNA and mRNA expression. Check the following link to download the relevant data (i.e. Expression-Genes and Expression-miRNA). If you prefer miRNA microarray data, you can use data from Glioblastoma (GBM) or Serous Cystadenocarcinoma (OV), because you get expression through sequence data for other cancer types.

https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm

You can use starBase Pan-Cancer Analysis Platform. starBase Pan-Cancer Analysis Platform is designed for deciphering Pan-Cancer Networks of lncRNAs, miRNAs, ceRNAs and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (>6000 samples) from The Cancer Genome Atlas (TCGA) Data Portal (all data available without limitations).

starBase generated Pan-Cancer networks of CLIP-Seq experimentally supported miRNA-lncRNA and miRNA-mRNA interactions.

Pan-Cancer miRNA-mRNA interactions can be available at http://starbase.sysu.edu.cn/targetSite.php

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