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What Predicate About Disease Is Suitable For Bioresource?

Hello. This is my first question!

Now I'm trying to make rdf about animal resource in NIBIO.
http://animal.nibio.go.jp/e_available_mice.html

I referred RIKEN bio resource data and most of our data could convert.

http://biolod.org/class/cria315s1i/Mouse_Strain

In addition to this, I'd like to connect disease information. I checked Bio Portal,UniProt, drugbank and DBpedia to get information. But I couldn't find exact predicate for disease. What I want to add is for example, "ICGN mice" have "Nephrosis" as disease. If you know exact predicate, please let me know.

Sometimes I confused what kind of predicate is suitable for our data. If you know how to find predicate for disease related data, please let me know too.

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written by maorinphone • maorinphone

Your Hyper-Links are not properly formatted.

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written by aravind ramesh aravind ramesh

Thank you for your comment. I edited. Is it OK?

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written by maorinphone • maorinphone

2 answers

did you try the disease ontology ? http://disease-ontology.org/ / http://purl.obolibrary.org/obo/doid.owl

Nephrosis : http://purl.obolibrary.org/obo/DOID_2527

<owl:Class rdf:about="&lt;a href=" http:="" purl.obolibrary.org="" obo="" DOID_2527"="" rel="nofollow">http://purl.obolibrary.org/obo/DOID_2527">
    <rdfs:label rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">nephrosis</rdfs:label>
    <rdfs:subClassOf rdf:resource="&lt;a href=" http:="" purl.obolibrary.org="" obo="" DOID_557"="" rel="nofollow">http://purl.obolibrary.org/obo/DOID_557"/>
    <oboInOwl:id rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">DOID:2527</oboInOwl:id>
    <oboInOwl:hasDbXref rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">MSH:D009401</oboInOwl:hasDbXref>
    <oboInOwl:hasDbXref rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">SNOMEDCT_2010_1_31:90708001</oboInOwl:hasDbXref>
    <oboInOwl:hasDbXref rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">UMLS_CUI:C0027720</oboInOwl:hasDbXref>
    <oboInOwl:hasOBONamespace rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">disease_ontology</oboInOwl:hasOBONamespace>
    <oboInOwl:hasExactSynonym rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">nephrosis</oboInOwl:hasExactSynonym>
    <oboInOwl:hasExactSynonym rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">nephrosis NOS</oboInOwl:hasExactSynonym>
    <oboInOwl:hasExactSynonym rdf:datatype="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema#string"="" rel="nofollow">http://www.w3.org/2001/XMLSchema#string">nephrosis, NOS</oboInOwl:hasExactSynonym>
</owl:Class>
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written by Pierre Lindenbaum Pierre Lindenbaum

Thank you for your answer.
I knew disease ontology, but I was not sure how to apply for our data.
So, if I use this ontology into our data with ttl, how to add these disease ontology information? I added has_symptom into our data. Does it correct?
And I couldn't find exact meaning's predicate that one mouse strain has a relation to some diseases... If you find any useful things, please let me know.

@prefix rdfs:    <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf:     <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix BioLOD_class_cria315s1i:  <http://purl.jp/bio/13/class/cria315s1i/> .
@prefix OBO: <http://purl.obolibrary.org/obo/doid#> .

<http://sample.go.jp/resource/animalbank/sample001>
rdf:type        BioLOD_class_cria315s1i:Mouse_Strain;
rdfs:label  "ICGN";
OBO:has_symptom "cold";
.....
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written by maorinphone • maorinphone

Nice Post!!! Really i have got valuable info in your post.

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written by bridal.artists123 • bridal.artists123

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