Gencode Annotation In Refgene Format

HI there,

i just downloaded the new Gencode.v19 human genome annotation and tried to convert it info refGene format. But somehow I fail. Can someone point to a script or a one-liner doing the conversion.

thanks.

annotation

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written 12.5 years ago by Phil S.

FWIW: solved it. Kent tools provides a tool gtfToGenepred. Using this and the command line cut -f 12 genePredFile | paste - genePredFile > refGeneFile does the jobs. thanks for reading...

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written 12.5 years ago by Phil S.

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