Question

Cazy Database Sequences Download

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10.3 years ago

elfeu ▴ 40

Hello guys!

I'm needing to download the CAZy database sequences. However, I need the number of hits for each sequence. Anyone have any script to automate this I?

Thank you

perl • 7.6k views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 10.3 years ago by elfeu ▴ 40

score 3 · Answer 1 · 2016-08-02

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7.7 years ago

shengwei ▴ 40

I use dbCAN, it's based on CAZy database and regularly updated. You can annotate your protein online, or download the database then do blastp/hmmscan search locally.

ADD COMMENT • link 5.5 years ago by shengwei ▴ 40

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I found out that dbCAN cannot be accessed recently,and there is nowhere to download CAZymes database anymore,what should I do to deal with that?

Please help. Thanks in advance. :)

ADD REPLY • link 4.8 years ago by 724303223 • 0

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There is an updated version here: http://bcb.unl.edu/dbCAN2/

ADD REPLY • link 4.5 years ago by shengwei ▴ 40

Ram · Answer 2 · 2015-01-15

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9.3 years ago

Alexander Viborg ▴ 10

Even that your question is old, I'll provide this answer in case that anyone else should be interested in a solution to get all sequences in the CAZy database.

Here you can download a recently up-to-date full copy of the CAZy database: http://research.ahv.dk/cazy/blast

For your second need, I'm unsure why you'd need the number of redundant sequences?

ADD COMMENT • link updated 2.1 years ago by Ram 43k • written 9.3 years ago by Alexander Viborg ▴ 10