Error In Galaxy Macs Peak Calling With .Bed Files
I was using Galaxy MACS to do peak calling using a pair of case and control .bed files. I didn't specify any of the parameters. An error occurred: error An error occurred with this dataset: Usage: macs <-t tfile> [-n name] [-g genomesize] [options] Example: macs -t ChIP.bam -c Control.bam -f BAM -g h -n test -w --call-subpeaks macs: error: no such option: --lambdaset
Why do the file names turn out to be .bam? What's the meaning of the error?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
macs3 regular peak calling on CHIP-seq
written by Jimpix •
-
Wig Files- Macs Vs. Igvtools Count In Focal Amplification
written by snarkyscientist •
-
Macs/Peaksplitter Output - Not Recognized By Igv Browser
written by Jan Hapala •
-
Error Bam File Is Malformed: Premature End Of File Using Gatk Tool Baserecalibrator
written by asphodel6 •
-
Picard Estimatelibrarycomplexity
written by komal.rathi
-
Chip-Seq Peak Calling Using Macs In Galaxy- Overlapping Peaks For Replicates
written by anon111 •
-
Chip-Seq Peak Calling Using Macs For Replicates In Galaxy
written by anon111 •
-
Cigar And Sequence Length Inconsistent
written by Bnfoguy •
-
Sam To Bam Conversion Reference Fasta File
written by Atom Smasher •
-
Macs Error: Missing Wig File
written by Lisanne •
I think the BAM files is only an usage example. Your Galaxy wrapper is not working properly. You should talk to your Galaxy Administrator to get the wrapper in sync with the MACS version. It seems that --lambdaset is not available in the installed MACS version in your Galaxy instance.