I'm trying to create WGCNA networks from a long time series of experiments from RNA-seq. I've separated the expression network in windows of time.

some of these windows don't seem to have a soft power threshold between 0 and 20 that is over .9

these problematic ones also throw the problem of : Done cluster 0 Error: evaluation nested too deeply: infinite recursion / options(expressions=)?

when running the automatic blockwise network creation

Any help/ideas would be incredibly appreciated