Hello everyone, I am currently doing some bibliographic research on rna binding structural motifs, and I can't find any database containing outputs of CLIP experiments (excluding miRNA data if possible), that is, rna sequences that bind with which RBP. Does any of you know something?
Thanks
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pietrosanto.1254532 •
2 answers
you can try starBase. starBase integrated 111 CLIP-Seq datasets to provide various RNA-RNA and protien-RNA regulatory interactions. You can download all the RBP binding peaks from the download page.
I just happened to be looking at this handy *Seq list. There are a couple of papers there but I don't have access, so I don't know if they found a database home. You could see if those were cited by others too, perhaps.
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