Biostar Beta. Not for public use.
Monitor Hiseq Run Remotely Linux
5
Entering edit mode
16 months ago
Irsan ♦ 6.9k
Amsterdam

With Illumina's Sequence analysis viewer you can monitor runs of your local HiSeq run remotely. Is there any linux alternative?. It does not have to be graphical, can also be command line based showing for example cluster density and percentage of clusters with mean base scores above 30?

hiseq hiseq • 1.6k views
ADD COMMENTlink
5
Entering edit mode
23 months ago
Ido Tamir 5.0k
Austria

Options:

  1. illuminas own cloud called basespace
  2. my R package illuminasavr. It has parsers for the current file formats and can generate a complete html site with plots (its in production at our institute).
  3. there is a more heavy client server solution with database etc ... called Metrix
ADD COMMENTlink
0
Entering edit mode

Excellent! Exactly what I was looking for

ADD REPLYlink
2
Entering edit mode
6.1 years ago
samsara • 580
The Earth

I use Remote Desktop Protocol applications to connect to HiSeq Instrument via linux. Gnome-RDP is Remote Desktop Protocol client for linux.

ADD COMMENTlink
0
Entering edit mode

Thanks, I'll try that. I have to figure out the hostname of the HiSeq then ...

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.1