Hello everyone, As it is known, changes in pH change the attractions between the groups in the side chains of the protein. Acidification can, for …

<p>I have a dataset of proteins (PDBs) and I would like to build a Rotamer Library from the Side Chains of these proteins. I know …

<p>Hi all,</p> <p>I have a list of UniprotACs corresponding to enzymes (no structure available for most of them). I'd like to identify residues in the …

<p>Do you know of any simple code or package that simply outputs the rotameric state of a given residue based on any of the rotamer …

<p>I'm a computer scientist, so I don't have a lot of knowledge about biology. I developed a statistical method to highlight some genes from microarray …

<p>I want to detect if there is in a multiple sequence alignment more basic to acidic or acidic to basic amino acid transitions based on …

<p>Are there any known enzymes which cleave the sidechains (not the backbones) of lysine or arginine? Smaller enzymes would be better. If none are known …

<p>Is there a way to find all of the proteins that are known or predicted to have a specific fold in an organism's genome? I'm …

<p>Hi, I would like to get an overview of ionic bonds in a given protein structure. Are there any programs that can calculate the distance …

<p>I am working on molecular dynamics simulation of a protein structure with approximately 1900 residues. In PDB, only c-alpha trace was available for this protein. …