Hi, I'm going to discover unknown motifs in my DNA sequences. While googling I faced many tools which deals with "transcription factor binding sites","regulatory sequences", and ... I'm not sure to use of these tools for my purpose. Could you please introduce me the best approach.
Best; Esmaeel
•
written
by
esmaeel •
1 answer
Time to get the skeletons out of the closet. Back in the days I wanted to seed the site with questions. There were no users, no answers, it was barren. So I created a user called Fabio and I posted a question that, in the end collected many useful answers.
I suggest that the original poster consult Biostar post number 4 for answers:
Finding common motifs in sequences
As for user number 3, Fabio I felt awful for cheating and I have never used him again. But he has been kept as a memento.
Log in to answer this question.
-
NsiteH, NSite and NSiteM
written by c.chakraborty
-
transcription factor binding sites were not over represented in modules
written by beiki.h.m •
-
regulatory regions discovery and alignment
written by elb
-
Best tool for finding transcription factor binding sites in a given genomic sequence
written by nash.claire
-
Advantages of Biobase's TRANSFAC over and above what is freely available?
written by fadsfadfdsafdasfdsa
-
How To Calculate The Sample Sizes Need To Discover Motifs
written by prabha •
-
Find Mirna Sequences
written by esmaeel •
-
Looking For A General Purpose Motif Finder Software
written by anarichardsonsand •
-
Databases Of Annotated Regulatory Sequences
written by Anima Mundi
-
Searching For Mouse Regulatory Motifs
written by Andrew Su
You might start here for focused answers already posted to Biostars: https://www.google.com/search?q=motif+discovery+site:biostars.org
You seem to lack a clearly-defined research problem. Deal with that before worrying about software.