How To Generate A Ld Heatmap In R

Hi, I am trying to generate LD heatmap in R. Could you please send me an input format file?

Thanks in advance. Yogi

heatmap

• 5,353 views • link

updated 12.9 years ago by Istvan Albert

• written 12.9 years ago by yp •

You won't get any help asking questions like that. You need to be more specific. This is a good post to learn how to ask questions: How to ask Good Questions on Technical and Scientific Forums

• 0 views • link

written 12.9 years ago by Joseph Hughes

0 answers

No answers yet.

More posts like this

Free AI for R programming
written 2.2 years ago by mohamadzare6022 •

Hi, I am looking for some free AI to help me with R Programming. Except for Chatgpt and Bing, Could you please recommend me some? …
LD analysis using hapmap format file of SNPs
written 4.5 years ago by Preeti Sagar •

Hi, I m trying to do LD Decay analysis for my GWAS Studies in R. I m having my snps data in hapmap format. I …
How to plot LD decay per chromosome
written 5.2 years ago by Curls •

Hi all, I am trying to plot one population LD decay showing multiple chromosomes separately. I did calculations in TASSEL and uploaded the results in …
heatmap with plink genome file
written 7.2 years ago by biosol

Hi all! I'm trying to do a heatmap with `plink`'s output for IBD calculation (`.genome`file). This file has several columns, but only three are important …
how to incorporate R script in perl program and then run it from perl
written 9.4 years ago by kriti.awasthi23 •

I wanna know how to run fully functional R scripts in from perl command line interpreter using the output of perl. All I have is …
Linkage disequlibrium decay for a haploid fungi
written 9.8 years ago by jigarnt •

Hi All Bioinformaticians, I want to generate a 'LD heatmap' which depicts the decay in LD in the portions of genome where recombination has occured. …
Forum: PopGenome nucleotide diversity
written 10.4 years ago by yp •

Hi Group, I would like to calculate theta watterson using genome-wide SNPs. I am using PopGenome software. I find this software is very useful for …
Heat map using publicly available dataset
written 10.7 years ago by rakeshmbb •

Hi all, I am new in the area of bioinformatics. can anyone suggest me how can I generate heatmap using publicly available microarray and RNAseq …
Deblock a VCF
written 11.3 years ago by win

Hi all, I am trying to deblock a gVCF file and it requires an input BED file. While I have the BED files for the …
Ldheatmap In R
written 12.4 years ago by lkmklsmn

Hi, I am trying to build a LD heatmap in R. To do this I installed the 'genetics' and 'LDheatmap' packages. …