Snp Or Sequence Variation Plot

Question

[mmsimon25]

Hello All, Please can some one tell me or post the scripts that produce images of genome wide SNP density (or other variations) like the example given below.

http://genome.cshlp.org/content/23/8/1329/F3.large.jpg

Thanks, M

[Irsan]

also see Plotting Density Of Snps On Chromosomes

[Biomonika (Noolean)]

What about storing information you are interested in in GFF file, then uploading it to the genome browser and taking a screenshot?