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In Perl, Method For Extracting Fileheaders From Affy Cel File.

Looking for a Perl script to extract fileheaders from Affy CEL file.

I've found Bioconductor's "Affymetrix File Parsing SDK" -- but trying to avoid installing yet another system into my pipeline.

perl affymetrix
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updated by Ram Ram • written by Blunders • Blunders

I would be interested to know what your pipeline is about if you deal with Affy Cel files and prefer Perl over Bioconductor.

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written by Chris Evelo Chris Evelo

1 answer

Hello,

you can have a look on celutil command. you can use it with the command system with perl, and then parse the result.

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written by Nibua Nibua

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