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Extending Gene Set Enrichment Analysis

I have a set of enriched GO terms and would like to visualize them as a network using R. Maybe to to draw a DAG structure using as input the enriched GO terms.

I prefer not to use softwares as it requires the analysis to be done from the beginning.

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updated by Khader Shameer Khader Shameer • written by deschisandy • deschisandy

Yes, I had seen this questionalready but the solutions were directed towards using softwares mostly which I would like to avoid. I wanted to do it with R

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written by deschisandy • deschisandy

1 answer

Have you tried REVIGO ? You can also create a gene-term network and weight them and visualize using Cytoscape or Gephi too.

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written by Khader Shameer Khader Shameer

Yes, That is the only best option I have so far ! Thanks!

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written by deschisandy • deschisandy

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