I have been trying to dock compounds consisting silicon(Ex-Octaphenylsilsesquioxane) with a protein but Pyrx throws up an error saying "Si" is not a valid Autodock …
Hi I am trying to generate phylogenetic tree for 40 genome rice varieties using SNPhylo program . I could not install SNPhylo program successfully in …
I have Ubuntu 17.04 and i installed autodocktools as follows: `sudo apt install autodocktools` I attempt to run the program by typing autodocktools but I …
how to save pdb file from autodock vina docking result I am visualizing autodock vina results using PyMOL: I open out.pdbqt (containing 9 docked conformations …
I tried to optimize ligands using prodrg. after the completion of energy minimization, I chose DRGFIN.PDB file of ligand, as its having all hydrogens added. …
<p>My protein of interest contain 3500 a.a residues, its possible to predicting the structure through Homology modeling and / or any other tolls are there …
You'll have to be more specific. What, exactly, is the error? How are you executing AutoDock? What is your folder structure like?
A simple copy/paste will work wonders.