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Converting .Bcl To Fasta

Hi all,

I want to know how to convert .bcl files to FASTA format as most of the tools take inputs in FASTA form. Hope some one can help me.

fasta

What have you tried so far? Google suggests that conversion to FASTQ, rather than FASTA, might be what you want.

1 answer

Neil is correct, you will either get fastq output or sam/bam. For both exist converters and filters (the qualities serve a purpose) to fasta. And most NGS tools actually use fastq not fasta as input.

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