This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Need: Working Workflow Pipeline For Agilent Mirna Analysis Using Agimicrorna

I am trying to use "AgiMicroRna" package for agilent miRNA analysis.

I tried using the workflow suggested by authors but no success.

I have issues with readMicroRnaAFE; probe-mapping/choords etc.

Data come from "COMPACT" output of agilent feature extractor.

Does any one have "working" workflow for the same?.

It is Follow up of this Question

agilent mirna bioconductor workflow
• 4,412 views • link
updated by UnivStudent UnivStudent • written by Rm Rm

What's that error message behind 'no success'? How should we help if you don't give us all the information.

• 0 views • link
written by Michael Dondrup Michael Dondrup

Consider writing to the bioconductor mailing list, also. And be sure to read the bioconductor posting guide before posting.

• 0 views • link
written by Sean Davis Sean Davis

1 answer

Hey there! Was having a similar problems with the package and came across this answer on a blog Adapting the R AgiMicroRna Package to work with COMPACT AFE output files. Hope it works out for you!

• 0 views • link
updated by Ram Ram • written by UnivStudent UnivStudent

Log in to answer this question.

More posts like this