Gmapper-Ls With Several Fastq Files
Hello everybody,
I would like to know if it's possible to put several reads (fastq) files with gmapper-ls (SHRiMP) ? I know it's possible to put the option -1 and -2 but I have a lot of fastq files.
Thank you
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ramarquezo •
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alan.lahure •
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alan.lahure •
3 answers
I dont think so. You will have to run independent commands for each pair of fastq files.
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Ashutosh Pandey
Thank you for your response. I'll manage.
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alan.lahure •
try with a loop "for file in" ...
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ramarquezo •
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