"Artemis files", what kind of file is it ? What does it look like ? is it GFF ? XML ? TSV ? etc...

EMBL and GFF format

It's like many sequences with corresponding annotation in EMBL format

Zhenyu, I added the link to Artemis, please check whether that is what you meant.

Zhenyu, I may be wrong, but don't you just have to concatenate all the files ?

@Pierre I thought so too, but it has been 6 years since I last used Artemis

Hi Pierre, you are right. I wanna concatenate the annotated files. At the moment, not all of them, but i can do with some of them.

Hi Chris, i am not sure what the link means.

@Chris, thanks. I see the link now.

Artemis does not output valid EMBL files. It calls them TAB files. It is essentially the FT and SQ parts of the EMBL spec, but does not include a valid header so most EMBL importing programs won't parse it.

I assume you have broken your chromosome into smaller sequences (eg. 100kb) and annotated them, and now want to join them in a specific order to reconstruct the annotate chromosome?

Hello Zhenyu!

We believe that this post does not fit the main topic of this site.

Inactive for >2 years

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!